For example, if at half-depth the graphics window encloses a 400-Å by 300-Å rectangle, pixelSize 0.4 specifies image pixel dimensions of 1000 by 750. With perspective, the pixel size varies with depth, but pixelSize sets the value at half-depth (the midpoint along the line of sight). PixelSize is a relative ratio to the windowsize. (remove dust spots same or smaller than 6Å) Save images with transparent background, defined pixel size save test5.png transparentBackground true pixelSize 0.02 (specify cartoon mode)Show "regions" of structure in cartoon, atoms or other modes Remove dust surface dust #1 size 6 (show atoms of region 159-178 from coordinate #2 ) (roll does similarly) Show “regions” of structure in cartoon, atoms or other modes show #2:159-178 (select specified residues) Rotate object/view rotate the object along Y-axis by 120 degrees. (select 5 chains including 1, 2, I, J and Z, by 10 Å range) ("range 2.5" means expand the density by 2.5 Å.) (specific a region from coordinate to show on the density map) At here #1 is map, #2 is the coordinate vol zone #1 near #2:159-178
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